[sac-user] Building sac2c Stdlib fails, no <hwloc.h>

Hans-Nikolai Viessmann hv15 at hw.ac.uk
Wed Sep 6 23:46:55 CEST 2017


Hi Richard,

Ah, I know what is going on now. You used the MacOS release from the website? We'll its intentionally
compiled with HWLOC support (which provides the opportunity to affix threads to physical cores on
the CPU, and some other stuff besides), as such HWLOC needs to be installed in order to use sac2c.
Its not to clear though from the website that this is a hard dependency.

At any rate, I've spun up another build of a MacOS release just for you without HWLOC+CUDA (you
don't intend to use a GPU, do you?). The resulting PKG is attached. Let me know how it goes!

Sincerely,
Hans

On 09/06/2017 12:49 PM, Scholz, Sven-Bodo wrote:
Hans,
Thanks for taking care of this! I CC’ed sac-user at sac-home.org<mailto:sac-users at sac-home.org> :-)

Bodo

On 6 Sep 2017, at 11:36, Hans-Nikolai Viessmann <hv15 at hw.ac.uk<mailto:hv15 at hw.ac.uk>> wrote:

[This sender failed our fraud detection checks and may not be who they appear to be. Learn about spoofing at http://aka.ms/LearnAboutSpoofing]

Hi Richard,

Thanks for the report... I'm not near my desk at the moment so I can't
look at this right now.
Hopefully this evening I'll get a chance.

As far as I can tell the HWLOC include file (yes the one provided by the
OpenMPI group), is
being pulled in, even though it wasn't activated when you compiled
sac2c. Installing HWLOC
(compiling from source and placing it in ~/.local for instance) could
work, but its a lot of
hassle for you.

Sincerely,
Hans


On 09/06/2017 02:29 AM, Richard A. O'Keefe wrote:
OS X El Capitan, version 10.11.6, iMac (27-inch, Late 2014)
Processor 3.2 GHz core i5, 16 GiB of memory.
Xcode version 7.3.1, clang/cc version Apple LLVM 7.3.0 (clang-703.0.31),
Target: x86_64-apple-darwin15.6.0, Thread model: posix.

Today I downloaded and installed
sac2c-1.2-beta-BlackForest-467-gce8d4-omnibus.pkg

I then followed the instructions at
http://www.sac-home.org/doku.php?id=download:building:stdlib
namely
% git clone https://github.com/SacBase/Stdlib.git
% cd Stdlib
% git submodule init
% git submodule update
% mkdir build
% cd build
% cmake ..
% make
-- where I left out the -j4 --



Scanning dependencies of target create-sac2crc-file
[  0%] Creating package sac2crc file in user's home directory
-- Creating sac2crc package file
[  0%] Built target create-sac2crc-file
Scanning dependencies of target seq-module-Rand48
[  0%] Running /home/cshome/o/ok/Desktop/MacDrive/ok/commands.d/bison on `/home/cshome/o/ok/Downloads/sac2c-1.2-stdlib/Stdlib/src/stdio/src/FibreIO/FibreScan.l'
[  0%] Generating /home/cshome/o/ok/Downloads/sac2c-1.2-stdlib/Stdlib/build/src-seq/classes/random/src/Rand48/Rand48.o for target `seq'
In file included from /home/cshome/o/ok/Downloads/sac2c-1.2-stdlib/Stdlib/src/classes/random/src/Rand48/Rand48.c:9:
/usr/local/include/sac2c/1.2-beta-BlackForest-467-gce8d4/release/sac.h:5640:10: fatal error:
      'hwloc.h' file not found
#include <hwloc.h>
         ^
1 error generated.
abort: System failed to execute shell
abort: command
abort: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -O3  -pedantic -g   -fbracket-depth=2048 -Wall -Wextra -Weverything -Wno-padded -Wno-documentation -Wstrict-prototypes -Wno-unused-parameter -Wno-reserved-id-macro -Wno-shadow -Wno-undef -Wno-conversion -Wno-missing-prototypes -Wno-unused-function -Wno-covered-switch-default -Wno-format-nonliteral -Wno-switch-enum -Wno-missing-noreturn -Wno-float-equal -Wno-unused-macros -Wno-cast-align -Wno-cast-qual -Wno-documentation-unknown-command  -march=native -mtune=native -std=c99 -pedantic -Wno-unused -fno-builtin -I. -I/opt/local/include  -DHAVE_CONFIG_H -DEXT_STDLIB -I/home/cshome/o/ok/Downloads/sac2c-1.2-stdlib/Stdlib/build/include -I/home/cshome/o/ok/Downloads/sac2c-1.2-stdlib/Stdlib/include -I/home/cshome/o/ok/Downloads/sac2c-1.2-stdlib/Stdlib/src/classes/random/src/Rand48 -I/home/cshome/o/ok/Downloads/sac2c-1.2-stdlib/Stdlib/build/src-seq/classes/random/src/Rand48 -DSAC_TARGET_STRING=\"seq\" -DSAC_MODEXT_STRING=\".dylib\" -DSAC_TARGET_ENV_STRING=\"host\" -DSAC_SBI_STRING=\"seq\" -DSAC_RC_METHOD=SAC_RCM_local -DSAC_BACKEND_C99 -DSAC_MT_LIB_ -DSAC_MT_MODE=0 -DSAC_DO_RTSPEC=0 -I/usr/local/include/sac2c/1.2-beta-BlackForest-467-gce8d4/release -c -o /home/cshome/o/ok/Downloads/sac2c-1.2-stdlib/Stdlib/build/src-seq/classes/random/src/Rand48/Rand48.o /home/cshome/o/ok/Downloads/sac2c-1.2-stdlib/Stdlib/src/classes/random/src/Rand48/Rand48.c
abort: with exit code 1
compilation failed while initial.
make[2]: *** [src-seq/classes/random/src/Rand48/Rand48.o] Error 255
make[1]: *** [src-seq/CMakeFiles/seq-module-Rand48.dir/all] Error 2
make: *** [all] Error 2



Something somewhere has #defined ENABLE_HWLOC
However,
m% find /usr/local/include/sac2c/ -name hwloc.h -print
<< no output >>
Apparently this is supposed to come from OpenMPI.


It is not clear if I can install the library in a directory
of my own choosing.  This is actually important.






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